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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12004111_12009126_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12004111 - 12009126

Intron Length:

5016

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGACC

5'SS Class:

strong_major

3'SS Sequence:

TTTGGTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAG

U12 Branch Point Sequence:

AGTGATTTAAGC

Flanking Amino Acid:

PQFEAPSPSHSSIIDSTEYS

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

72.2

37.3

Major BPS

66.8

0.42

1.5

75.7

36.5

Major PPT

86.1

0.81

0.8

80.6

Minor 5ss

39.6

-1.2

52.3

44.6

Minor BPS

48.1

-0.1

1.9

58.1

40.8

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450