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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12009185_12013168_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12009185 - 12013168

Intron Length:

3984

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTAA

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

CTTTTCTGAAGA

Flanking Amino Acid:

QPPGFSGSSQTKKQPWYNST

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

28.7

Major BPS

82.1

0.8

71.6

36.4

Major PPT

0.58

0.8

73.4

30.4

Minor 5ss

-1.6

3.3

46.2

49.1

Minor BPS

59.5

0.3

1.8

71.44

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450