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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12013284_12016787_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12013284 - 12016787

Intron Length:

3504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TACCCCTCCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

TATTCTTTATCC

Flanking Amino Acid:

YFSTRMTRVSDDSRTTSQLD

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

23.3

Major BPS

84.7

0.86

74.3

40.7

Major PPT

66.6

0.37

0.8

58.3

32.7

Minor 5ss

37.4

-1.4

2.9

50.4

Minor BPS

72.1

0.67

1.5

79.45

35.7

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450