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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12016924_12033035_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12016924 - 12033035
Intron Length:
16112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGGTTCTCAATC
Flanking Amino Acid:
DLYNGSSIVSSIEFDRDCDY
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
60.9
0.32
1.5
66.86
39.1

Associated Gene:

Gene:
COP1
Ensembl Gene ID:
ENSAPLG00000015973
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047677
11984855 - 12100436
115582
ENSAPLT00000016680
11984855 - 12102304
117450