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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12033180_12041506_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12033180 - 12041506

Intron Length:

8327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAG

U12 Branch Point Sequence:

TATGGTTTAAGG

Flanking Amino Acid:

ENEMTCNSKISCISWSSYHK

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

85.2

32.2

Major BPS

57.9

0.2

1.7

69.7

44.2

Major PPT

88.4

0.86

0.6

88.2

21.6

Minor 5ss

37.2

-1.4

3.6

57.3

47.4

Minor BPS

47.1

-0.3

2.2

55.6

46.1

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450