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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12050023_12067094_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12050023 - 12067094

Intron Length:

17072

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TCTTTCTCATCC

Flanking Amino Acid:

SRYHLAFGCADHCVHYYDLR

Intron Amino Acid Position:

449

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

83.2

30.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

77.8

0.63

0.8

69.9

35.5

Minor 5ss

33.6

-1.9

41.3

45.3

Minor BPS

0.2

1.8

69.92

41.8

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450