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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12067213_12070754_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12067213 - 12070754

Intron Length:

3542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

GTGTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAA

U12 Branch Point Sequence:

GTAACTTTAAGT

Flanking Amino Acid:

KFVSGEEIVSASTDSQLKLW

Intron Amino Acid Position:

488

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.56

1.3

81.8

38.5

Major BPS

65.9

0.4

57.6

Major PPT

80.1

0.68

76.9

42.1

Minor 5ss

42.6

-0.8

2.9

41.5

Minor BPS

60.9

0.42

1.7

74.37

42.2

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450