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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12070880_12071959_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12070880 - 12071959

Intron Length:

1080

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TACTTTTTATTT

Flanking Amino Acid:

LASNGDYIACGSENNSLYLY

Intron Amino Acid Position:

530

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.8

35.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

92.6

0.96

0.7

85.4

34.1

Minor 5ss

29.8

-2.3

2.6

30.5

37.5

Minor BPS

58.6

0.35

1.5

71.82

40.2

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450