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Intron Name: Anas_platyrhynchos_platyrhynchos_8_12072121_12100256_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12072121 - 12100256

Intron Length:

28136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAC

U12 Branch Point Sequence:

TGAATTGTGACA

Flanking Amino Acid:

AVCWRALPDGESNVLIAANS

Intron Amino Acid Position:

584

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.2

39.3

Major BPS

71.3

0.53

1.2

63.1

44.5

Major PPT

100

1.12

0.4

100

Minor 5ss

-0.2

2.8

59.7

45.1

Minor BPS

45.2

-0.3

55.57

37.3

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047677

11984855 - 12100436

115582

ENSAPLT00000016680

11984855 - 12102304

117450