Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12100302_12102286_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12100302 - 12102286

Intron Length:

1985

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CCCTATTAATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

ATATTCTAAATG

Flanking Amino Acid:

IAANSQGTIKVLELV*

Intron Amino Acid Position:

599

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

66.9

0.38

66.1

38.4

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

57.7

0.1

1.7

61.91

40.5

Associated Gene:

Gene:

COP1

Ensembl Gene ID:

ENSAPLG00000015973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016680

11984855 - 12102304

117450