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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12139354_12141929_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12139354 - 12141929
Intron Length:
2576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAATG
5'SS Class:
major
3'SS Sequence:
GGTCCTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGGGCTCTGACC
Flanking Amino Acid:
SNCCQENAATGRLDYTLPCS
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.3
42.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
79.2
0.66
0.9
72.7
37.5
Minor 5ss
35.8
-1.6
3.3
48.6
47.2
Minor BPS
46
-0.3
1.7
51.59
39.8

Associated Gene:

Gene:
TNR
Ensembl Gene ID:
ENSAPLG00000001323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001829
12138858 - 12166113
27256