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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12143092_12144009_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12143092 - 12144009
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TGATCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ACCTCCTGATCC
Flanking Amino Acid:
SIPVTAKVTTNLATPQGLKF
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
76.1
0.59
0.9
66.4
40.4
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
53
0.08
1.8
61.44
43.8

Associated Gene:

Gene:
TNR
Ensembl Gene ID:
ENSAPLG00000001323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001829
12138858 - 12166113
27256