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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12153879_12153994_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12153879 - 12153994
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACCCAACCCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GCATCTGTAACA
Flanking Amino Acid:
SVPATMNARTELDSPRDLLV
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
59.5
0.21
0.9
50.3
32
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
54.3
0.13
2
64.51
42.1

Associated Gene:

Gene:
TNR
Ensembl Gene ID:
ENSAPLG00000001323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001829
12138858 - 12166113
27256