Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12155402_12155868_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12155402 - 12155868

Intron Length:

467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGGGT

5'SS Class:

major

3'SS Sequence:

TCTGTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

GTGTCACCAATG

Flanking Amino Acid:

HYRISYRANEGRTDSAAIAS

Intron Amino Acid Position:

901

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

69.7

40.9

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

80.2

0.68

0.8

73.8

31.3

Minor 5ss

-2.2

3.6

47.4

Minor BPS

43.4

-0.6

2.1

50.69

43.2

Associated Gene:

Gene:

TNR

Ensembl Gene ID:

ENSAPLG00000001323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001829

12138858 - 12166113

27256