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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12156743_12157311_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12156743 - 12157311
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGATTA
5'SS Class:
major
3'SS Sequence:
CTTACAGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCTATTCTAACT
Flanking Amino Acid:
SYVLVLTRHAGETILVDGTN
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
74
32.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.2
0.52
1
65.7
39.8
Minor 5ss
35
-1.7
3.3
47
48.4
Minor BPS
51.3
0.12
1.7
68.3
43

Associated Gene:

Gene:
TNR
Ensembl Gene ID:
ENSAPLG00000001323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001829
12138858 - 12166113
27256