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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12161938_12163164_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12161938 - 12163164
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTCCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTCCCTGCTG
Flanking Amino Acid:
DMTTDGGGWIVFQRRQNGLT
Intron Amino Acid Position:
1174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
67
38.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.3
0.64
0.8
72.7
32
Minor 5ss
33.2
-1.9
2.8
42.7
38.4
Minor BPS
42.6
-0.7
3.6
67.15
41

Associated Gene:

Gene:
TNR
Ensembl Gene ID:
ENSAPLG00000001323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001829
12138858 - 12166113
27256