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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12185696_12186370_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12185696 - 12186370
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGT
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGTCTGCAATT
Flanking Amino Acid:
LSVGNYRGNAGDAMTYHNGW
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71.3
40.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78
0.63
0.7
77.4
24.6
Minor 5ss
28.7
-2.4
3.2
36.5
42.7
Minor BPS
48.4
-0
2.1
70.01
41.8

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698