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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12187292_12188710_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12187292 - 12188710
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TCTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTGCTGTGAACT
Flanking Amino Acid:
DMTTDGGGWIVFQRRNTGEL
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73
31.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
86
0.81
0.8
80.4
31.6
Minor 5ss
30.8
-2.2
3.3
41.6
40.4
Minor BPS
46.6
-0.1
2.2
65.52
45

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698