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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12188863_12189699_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12188863 - 12189699
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCTTGCTGATGT
Flanking Amino Acid:
SRQTDSTFSTVSFLYPHPAD
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.4
35.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
83.7
0.76
0.7
76.5
32.2
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
42.3
-0.5
2.3
59.91
49.3

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698