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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12189833_12190336_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12189833 - 12190336
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTGTTTTATTT
Flanking Amino Acid:
TYQGPDGTSKAVQLGPSEQR
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83
0.74
0.9
80.8
36.4
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698