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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12193984_12194201_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12193984 - 12194201
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAACT
Flanking Amino Acid:
SKRASTEAVTDIDSPAHLVT
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.8
77.6
30.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
76.3
0.9
1.1
83.91
37.2

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698