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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12194466_12195146_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12194466 - 12195146
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTCTAATAACT
Flanking Amino Acid:
SKKASTTAVTEIDSPTMLLT
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.1
0.72
0.8
76.8
32
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
51.6
0.13
1.9
75.41
40.8

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698