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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12198898_12199727_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12198898 - 12199727
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
GTTTGCTCTACA
Flanking Amino Acid:
EGFFGPDCSQVLAPQNLRLL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
67.8
39.3
Major BPS
66.3
0.41
1
61
37.5
Major PPT
84.5
0.78
0.7
77.4
31.3
Minor 5ss
30.8
-2.2
3
31.1
42.4
Minor BPS
48.8
-0.1
2.3
68.69
43.1

Associated Gene:

Gene:
TNN
Ensembl Gene ID:
ENSAPLG00000003018
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003097
12184832 - 12201529
16698