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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12216284_12216386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12216284 - 12216386
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGGCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTGCTGATCA
Flanking Amino Acid:
RDSCPVRIRNRGPCGRLLNG
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
65.7
0.35
1
57.5
42.5
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
55.4
0.16
2.1
76.27
40.9

Associated Gene:

Gene:
MRPS14
Ensembl Gene ID:
ENSAPLG00000030710
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024731
12213696 - 12216513
2818