Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12218255_12219731_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12218255 - 12219731

Intron Length:

1477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

ATCCATCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATCCAT

U12 Branch Point Sequence:

TATGCCTCATAT

Flanking Amino Acid:

TQVEKESKEKEKAAYDTSDP

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

35.3

Major BPS

69.5

0.49

1.2

78.7

34.9

Major PPT

76.5

0.6

0.9

69.6

35.8

Minor 5ss

39.9

-1.1

3.4

54.7

43.6

Minor BPS

48.8

-0

45.3

Associated Gene:

Gene:

CACYBP

Ensembl Gene ID:

ENSAPLG00000003474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048157

12217935 - 12222945

5011

ENSAPLT00000003554

12217935 - 12223016

5082