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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12246854_12292728_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12246854 - 12292728
Intron Length:
45875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TAATCTCTAAAT
Flanking Amino Acid:
RLMEQACNIKVPTKKLKKYE
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
72
0.49
0.9
65.3
40.6
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
58.8
0.35
1.8
76.52
39.3

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022441
12236744 - 12452889
216146
ENSAPLT00000019583
12236744 - 12452856
216113
ENSAPLT00000006207
12246149 - 12452889
206741