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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12307931_12323652_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12307931 - 12323652
Intron Length:
15722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATTT
Flanking Amino Acid:
FHIIDLLLCEGMNIIFHVAL
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
68.9
0.67
1.5
82.89
39.2

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019583
12236744 - 12452856
216113
ENSAPLT00000006207
12246149 - 12452889
206741
ENSAPLT00000022441
12236744 - 12452889
216146