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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12325284_12328792_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12325284 - 12328792
Intron Length:
3509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTCTAAATT
Flanking Amino Acid:
SFLAAVLLLHMPEEQAFCVF
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.1
0.79
0.9
77
41.9
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
69
0.67
1.6
83.97
37.3

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022441
12236744 - 12452889
216146
ENSAPLT00000006207
12246149 - 12452889
206741