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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1233628_1263885_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1233628 - 1263885
Intron Length:
30258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGTCCTTTGATT
Flanking Amino Acid:
FCVHNQMLEFKPRMIAAGKF
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
70.1
0.71
1.1
81.19
34.2

Associated Gene:

Gene:
BCAR3
Ensembl Gene ID:
ENSAPLG00000003983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004088
1185705 - 1263931
78227