About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12414164_12418837_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12414164 - 12418837
Intron Length:
4674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
GTCTGTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTAGAATAATA
Flanking Amino Acid:
LYSWGELLVRWHNNLVVRPN
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
58.9
45.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
74.5
0.55
0.9
72.7
37.5
Minor 5ss
34.6
-1.8
3.4
44.5
44.4
Minor BPS
43.7
-0.4
2.2
59.33
40.1

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022441
12236744 - 12452889
216146
ENSAPLT00000019583
12236744 - 12452856
216113
ENSAPLT00000006207
12246149 - 12452889
206741