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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12433682_12438307_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12433682 - 12438307
Intron Length:
4626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGTGT
5'SS Class:
weak_major
3'SS Sequence:
TATTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
GGTCCTATACAT
Flanking Amino Acid:
TETFYMKLKQSEGKSHTSTG
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
63
43.8
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
82.6
0.73
0.8
81.5
35.9
Minor 5ss
50.4
0.01
2.9
73.6
43
Minor BPS
44.4
-0.3
1.9
61.54
41.6

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022441
12236744 - 12452889
216146
ENSAPLT00000019583
12236744 - 12452856
216113
ENSAPLT00000006207
12246149 - 12452889
206741