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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12446552_12447325_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12446552 - 12447325
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ACTTCTTTATTA
Flanking Amino Acid:
VKEDDGKGNFSPVPKDRDKL
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.6
0.69
0.8
78.5
35.3
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
62.9
0.4
1.5
69.01
38.2

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019583
12236744 - 12452856
216113
ENSAPLT00000006207
12246149 - 12452889
206741
ENSAPLT00000022441
12236744 - 12452889
216146