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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12451552_12451897_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12451552 - 12451897
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
LHLVLDPSATEVSAPRPSSP
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
RABGAP1L
Ensembl Gene ID:
ENSAPLG00000005959
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022441
12236744 - 12452889
216146
ENSAPLT00000019583
12236744 - 12452856
216113
ENSAPLT00000006207
12246149 - 12452889
206741