Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12452085_12452724_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12452085 - 12452724

Intron Length:

640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTACTAC

5'SS Class:

weak_major

3'SS Sequence:

CTTCTACTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

TTCTACTTACAG

Flanking Amino Acid:

SGKDEKPQLKVFSNGDDQLE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.9

0.23

1.2

56.4

37.4

Major BPS

65.3

0.38

71.6

30.1

Major PPT

83.3

0.75

0.8

76.7

30.9

Minor 5ss

45.9

-0.4

2.6

59.1

45.8

Minor BPS

50.2

-0.1

61.49

45.9

Associated Gene:

Gene:

RABGAP1L

Ensembl Gene ID:

ENSAPLG00000005959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019583

12236744 - 12452856

216113

ENSAPLT00000006207

12246149 - 12452889

206741

ENSAPLT00000022441

12236744 - 12452889

216146