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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12454820_12464031_R

Intron Information:

Intron Rank:
131907
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12454820 - 12464031
Intron Length:
9212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATG
5'SS Class:
major
3'SS Sequence:
TCTTGCCAGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
54.7
0.11
1.2
56.4
38.3
Minor 5ss
43.2
-0.7
2.8
57.7
46.5
Minor BPS
48.1
-0
1.8
67.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018182
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032368
12453569 - 12464193
10625