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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12507169_12513887_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12507169 - 12513887
Intron Length:
6719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGTG
5'SS Class:
major
3'SS Sequence:
CATCTCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGTCATAAAC
Flanking Amino Acid:
SALLQLVGAQVPEQQPITLC
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
60.8
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.8
76.6
31.6
Minor 5ss
38.2
-1.3
3.7
55.2
49
Minor BPS
56.3
0.18
1.8
72.18
38.7

Associated Gene:

Gene:
RC3H1
Ensembl Gene ID:
ENSAPLG00000005341
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034227
12506801 - 12537689
30889
ENSAPLT00000023296
12506801 - 12537689
30889
ENSAPLT00000005553
12506801 - 12537689
30889