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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12514009_12515323_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12514009 - 12515323
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
LYLKPLSSARGVGLNSTTQS
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.3
0.7
1
83.2
31.8
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
RC3H1
Ensembl Gene ID:
ENSAPLG00000005341
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034227
12506801 - 12537689
30889
ENSAPLT00000023296
12506801 - 12537689
30889
ENSAPLT00000005553
12506801 - 12537689
30889