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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12515564_12516602_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12515564 - 12516602
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCTCTGATC
Flanking Amino Acid:
RARGCQFLGPAMQEEALKLV
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.8
0.65
0.8
70.3
36.3
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
58.7
0.25
1.6
69.8
36.3

Associated Gene:

Gene:
RC3H1
Ensembl Gene ID:
ENSAPLG00000005341
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005553
12506801 - 12537689
30889
ENSAPLT00000034227
12506801 - 12537689
30889
ENSAPLT00000023296
12506801 - 12537689
30889