Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12517887_12519093_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12517887 - 12519093

Intron Length:

1207

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCCA

5'SS Class:

major

3'SS Sequence:

TAATTTTTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATTATTATAATT

Flanking Amino Acid:

KSHMQSIIDKLQTPASFAQS

Intron Amino Acid Position:

324

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.68

65.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

75.2

0.57

1.1

79.7

37.5

Minor 5ss

30.4

-2.2

3.3

39.6

45.9

Minor BPS

56.9

0.29

1.6

75.47

35.2

Associated Gene:

Gene:

RC3H1

Ensembl Gene ID:

ENSAPLG00000005341

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034227

12506801 - 12537689

30889

ENSAPLT00000023296

12506801 - 12537689

30889

ENSAPLT00000005553

12506801 - 12537689

30889