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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12519227_12521178_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12519227 - 12521178
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTCGATGCAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TCTTCCTATATA
Flanking Amino Acid:
ELLANIDPSPDAPPPTWEQL
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
78
38.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
53.5
0.08
1
47.1
40.2
Minor 5ss
33.2
-1.9
2.9
41.7
44.7
Minor BPS
56.7
0.2
2
70.72
41.9

Associated Gene:

Gene:
RC3H1
Ensembl Gene ID:
ENSAPLG00000005341
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034227
12506801 - 12537689
30889
ENSAPLT00000023296
12506801 - 12537689
30889
ENSAPLT00000005553
12506801 - 12537689
30889