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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12523297_12526566_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12523297 - 12526566
Intron Length:
3270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTCAATT
Flanking Amino Acid:
TFAHSQEELEKFRKMNKRLV
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
83
25.9
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
60.8
0.42
1.6
79.05
38

Associated Gene:

Gene:
RC3H1
Ensembl Gene ID:
ENSAPLG00000005341
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005553
12506801 - 12537689
30889
ENSAPLT00000034227
12506801 - 12537689
30889
ENSAPLT00000023296
12506801 - 12537689
30889