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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12529966_12531969_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12529966 - 12531969
Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTAGG
5'SS Class:
major
3'SS Sequence:
CCATCTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
AAGTTCTTGACT
Flanking Amino Acid:
VVAARSVEMANVDSKAMRDQ
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.7
45.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
74.6
0.55
0.8
69.3
31
Minor 5ss
41.7
-0.9
2.5
51.4
45.3
Minor BPS
71
0.74
1.2
77.68
38.7

Associated Gene:

Gene:
RC3H1
Ensembl Gene ID:
ENSAPLG00000005341
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023296
12506801 - 12537689
30889
ENSAPLT00000005553
12506801 - 12537689
30889
ENSAPLT00000034227
12506801 - 12537689
30889