About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12575030_12576439_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
12575030 - 12576439

Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGAGTTCT

5'SS Class:
strong_major

3'SS Sequence:
CCCCACCCCACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TAAAAAT

U12 Branch Point Sequence:
ATTCCATTTACA

Flanking Amino Acid:
VVRPTSSEIDRFSPSGSMVA

Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
93
1.01
0.7
86.6
23.3

Major BPS
62.8
0.32
1.1
67.9
34.4

Major PPT
64.6
0.33
0.8
56.5
27

Minor 5ss
37.4
-1.4
2.9
50.4
46

Minor BPS
57.2
0.22
1.9
73.02
37.7

Associated Gene:

Gene:
ZBTB37

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

12572349 - 12579278
6930