About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12577373_12578322_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
12577373 - 12578322
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACACCTGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
54.8
0.11
1.2
53.3
41.3
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
67.3
0.52
1.5
73.85
37.6

Associated Gene:

Gene:
ZBTB37
Ensembl Gene ID:
ENSAPLG00000004883
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005034
12572349 - 12579278
6930