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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12588089_12588515_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12588089 - 12588515
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAACAT
5'SS Class:
major
3'SS Sequence:
TACCCTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAC
U12 Branch Point Sequence:
TTTGCTTTCAGC
Flanking Amino Acid:
FHYIQGKNEKEMKIDMTVPV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
64.9
41
Major BPS
64
0.35
1
72.7
31.8
Major PPT
73
0.52
0.8
70.3
30.3
Minor 5ss
31.6
-2.1
3.5
46.9
48.4
Minor BPS
50.7
0.01
2.1
69.26
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004838
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004977
12587425 - 12589146
1722