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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12588652_12588993_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12588652 - 12588993
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTCCT
5'SS Class:
major
3'SS Sequence:
TGCTACCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTTACTGTGACT
Flanking Amino Acid:
SPRWNPAETTAKDYELRQYE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.5
42.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.9
0.58
0.9
65.9
40.6
Minor 5ss
37.4
-1.4
3
52.7
43.6
Minor BPS
53.3
0.18
2.1
76.49
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004838
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004977
12587425 - 12589146
1722