Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12605607_12607122_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12605607 - 12607122

Intron Length:

1516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTTAC

U12 Branch Point Sequence:

CTTGTCTTACGG

Flanking Amino Acid:

APFFFKPTNKDELVAFLQKV

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.99

0.7

83.2

30.8

Major BPS

63.8

0.34

1.2

57.4

41.4

Major PPT

88.9

0.88

0.7

81.2

36.5

Minor 5ss

29.7

-2.3

2.6

33.7

41.6

Minor BPS

46.5

-0.4

2.1

53.66

47.7

Associated Gene:

Gene:

NPL

Ensembl Gene ID:

ENSAPLG00000004168

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028647

12601491 - 12612293

10803

ENSAPLT00000004292

12597022 - 12610223

13202