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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12619631_12623379_F

Intron Information:

Intron Rank:
135828
Intron Class:
major
Intron Phase:
Intron Coordinates:
12619631 - 12623379
Intron Length:
3749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.5
0.55
0.9
66.4
40.7
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
47.5
-0.1
2.1
68.97
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023145
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024453
12619432 - 12636332
16901