Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12684540_12686513_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12684540 - 12686513

Intron Length:

1974

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGCGAG

5'SS Class:

major

3'SS Sequence:

TTGTCTGCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TGTACTCTGATG

Flanking Amino Acid:

YNFDNSPVLQEWVTATDIRV

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

63.4

43.1

Major BPS

0.72

38.9

Major PPT

0.54

0.9

66.4

40.7

Minor 5ss

34.6

-1.8

3.5

49.3

Minor BPS

48.3

-0.2

1.7

56.6

39.1

Associated Gene:

Gene:

LAMC1

Ensembl Gene ID:

ENSAPLG00000003279

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003443

12646723 - 12707302

60580