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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12687768_12689374_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12687768 - 12689374
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTATGTGTG
5'SS Class:
weak_major
3'SS Sequence:
CCTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CACTCATGGATG
Flanking Amino Acid:
ATAESANECLPCDCNGRSQE
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.4
59.7
45.2
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
88.5
0.87
0.6
84
24
Minor 5ss
43.3
-0.7
3.1
52.7
44.8
Minor BPS
44.5
-0.5
1.8
44.91
41.5

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580